Index

A

add_animals() (src.biosim.island.Island.BaseCell method) (src.biosim.landscape.BaseCell method), [1] add_carn_to_new_cell() (src.biosim.island.Island method) add_herb_to_new_cell() (src.biosim.island.Island method) add_migrated_carn() (src.biosim.landscape.BaseCell method), [1] add_migrated_herb() (src.biosim.landscape.BaseCell method), [1] add_population() (src.biosim.island.Island method) (src.biosim.simulation.BioSim method)

age (src.biosim.animals.Carnivore attribute) (src.biosim.animals.Herbivore attribute) age_animals() (src.biosim.island.Island method) age_one_year() (src.biosim.animals.Carnivore method) (src.biosim.animals.Herbivore method) age_pop() (src.biosim.landscape.BaseCell method), [1] alpha (src.biosim.landscape.Jungle attribute) (src.biosim.landscape.Savanna attribute) animal_distribution (src.biosim.simulation.BioSim attribute)

B

BaseCell (class in src.biosim.landscape) BioSim (class in src.biosim.simulation) birth() (src.biosim.animals.Carnivore method) (src.biosim.animals.Herbivore method) (src.biosim.landscape.BaseCell method)

birth_list (src.biosim.landscape.BaseCell attribute)

C

Carnivore (class in src.biosim.animals) carnivore_tot_data (src.biosim.island.Island attribute) carnivores (src.biosim.landscape.BaseCell attribute) cell_colors (src.biosim.visualization.Visuals attribute) chain_lists() (src.biosim.landscape.BaseCell method), [1]

check_length() (in module src.biosim.island) choose_new_location() (in module src.biosim.landscape) clean_multi_line_string() (src.biosim.island.Island static method) clean_simulation() (src.biosim.simulation.BioSim method) create_and_update_stats_structure() (src.biosim.island.Island method)

D

death() (src.biosim.animals.Carnivore method) (src.biosim.animals.Herbivore method) (src.biosim.landscape.BaseCell.BaseAnimal method) death_list (src.biosim.landscape.BaseCell attribute) density_heatmap (src.biosim.visualization.Visuals attribute) Desert (class in src.biosim.landscape)

die() (src.biosim.island.Island method) (src.biosim.landscape.BaseCell method), [1] draw_animals_over_time() (src.biosim.visualization.Visuals method) draw_geography() (src.biosim.visualization.Visuals method) draw_geography_exp() (src.biosim.visualization.Visuals method) draw_heat_map_carnivore() (src.biosim.visualization.Visuals method) draw_heat_map_herbivore() (src.biosim.visualization.Visuals method)

E

eat() (src.biosim.animals.Carnivore method), [1]

empty_nested_list() (src.biosim.visualization.Visuals method)

F

f_max (src.biosim.landscape.Jungle attribute) (src.biosim.landscape.Savanna attribute) feed() (src.biosim.animals.Carnivore method), [1] (src.biosim.animals.Herbivore method) (src.biosim.island.Island method) (src.biosim.landscape.BaseCell method), [1]

feed_all() (src.biosim.landscape.BaseCell method), [1] feed_carnivores() (src.biosim.landscape.BaseCell method), [1] feed_herbivores() (src.biosim.landscape.BaseCell method), [1] fitness (src.biosim.animals.Carnivore attribute) (src.biosim.animals.Herbivore attribute) fitness_calculation (in module src.biosim.animals) fodder (src.biosim.landscape.BaseCell attribute)

G

get_data_heat_map() (src.biosim.visualization.Visuals method) grow() (src.biosim.landscape.BaseCell method), [1] (src.biosim.landscape.Jungle method) (src.biosim.landscape.Savanna method)

H

has_moved (src.biosim.animals.Carnivore attribute) (src.biosim.animals.Herbivore attribute)

Herbivore (class in src.biosim.animals) herbivore_tot_data (src.biosim.island.Island attribute) herbivores (src.biosim.landscape.BaseCell attribute)

I

Island (class in src.biosim.island)

island_stats() (src.biosim.simulation.BioSim method)

J

Jungle (class in src.biosim.landscape)

K

kill_or_not() (src.biosim.animals.Carnivore method), [1]

L

load_sim() (in module src.biosim.simulation) lose_weight() (src.biosim.animals.Carnivore method) (src.biosim.animals.Herbivore method) (src.biosim.island.Island method) (src.biosim.landscape.BaseCell method), [1]

M

make_color_pixels() (src.biosim.visualization.Visuals method) make_map() (src.biosim.island.Island method) make_movie() (src.biosim.simulation.BioSim method) map (src.biosim.island.Island attribute)

meat_for_carnivores (src.biosim.landscape.BaseCell attribute) migrate() (src.biosim.island.Island method) (src.biosim.landscape.BaseCell method), [1] Mountain (class in src.biosim.landscape)

N

num_animals (src.biosim.island.Island attribute) (src.biosim.landscape.BaseCell attribute) (src.biosim.simulation.BioSim attribute)

num_animals_per_species (src.biosim.island.Island attribute) (src.biosim.simulation.BioSim attribute) num_carnivores (src.biosim.landscape.BaseCell attribute) num_herbivores (src.biosim.landscape.BaseCell attribute)

O

Ocean (class in src.biosim.landscape)

P

passable (src.biosim.landscape.Jungle attribute) (src.biosim.landscape.Savanna attribute) probability_calc() (src.biosim.island.Island method), [1]

procreate() (src.biosim.island.Island method) (src.biosim.landscape.BaseCell method), [1] propensity (src.biosim.landscape.BaseCell attribute)

R

ready_for_new_year() (src.biosim.island.Island method) remove_migrated_carn() (src.biosim.landscape.BaseCell method), [1] remove_migrated_herb() (src.biosim.landscape.BaseCell method), [1] reset_calculate_propensity() (src.biosim.island.Island.BaseCell method) (src.biosim.landscape.BaseCell method), [1]

reset_has_moved() (src.biosim.animals.Carnivore method) (src.biosim.animals.Herbivore method) (src.biosim.island.Island.BaseAnimal method)

S

Savanna (class in src.biosim.landscape) save_fig() (src.biosim.visualization.Visuals method) save_sim() (in module src.biosim.simulation) (src.biosim.simulation.BioSim method) set_animal_parameters() (src.biosim.simulation.BioSim static method) set_landscape_parameters() (src.biosim.simulation.BioSim static method) set_parameters() (src.biosim.animals.Carnivore class method) (src.biosim.animals.Herbivore class method) (src.biosim.landscape.BaseCell class method)

setup_graphics() (src.biosim.visualization.Visuals method) simulate() (src.biosim.simulation.BioSim method) simulate_one_year() (src.biosim.island.Island method) sort_by_fitness() (src.biosim.landscape.BaseCell method) (src.biosim.landscape.BaseCell static method) src.biosim.animals (module) src.biosim.island (module) src.biosim.landscape (module) src.biosim.simulation (module) stats (src.biosim.island.Island attribute)

U

update_animals_over_time() (src.biosim.visualization.Visuals method) update_data_list() (src.biosim.island.Island method)

update_fig() (src.biosim.visualization.Visuals method) update_heat_maps() (src.biosim.visualization.Visuals method) update_year() (src.biosim.visualization.Visuals method)

V

Visuals (class in src.biosim.visualization)

W

weight (src.biosim.animals.Carnivore attribute) (src.biosim.animals.Herbivore attribute)

will_migrate() (src.biosim.animals.Carnivore method) (src.biosim.animals.Herbivore method)

Y

year (src.biosim.island.Island attribute) (src.biosim.simulation.BioSim attribute)